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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_607451_609649_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
607451 - 609649
Intron Length:
2199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CTCTCTGGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGTAT
U12 Branch Point Sequence:
CTCTCTGGTATA
Flanking Amino Acid:
RKLQEANLKVVTAPVPLKGS
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.3
74
36.6
Major BPS
54.9
0.12
1.4
55.4
41.7
Major PPT
68.7
0.42
1
64
36.8
Minor 5ss
34.7
-1.7
3.4
49.7
41.3
Minor BPS
40.3
-0.7
2.2
50.76
42

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982