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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6076722_6076943_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6076722 - 6076943
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCATCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
CATGCCTGATTT
Flanking Amino Acid:
IISFNDTEVEDLLSIVASVL
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
68.5
0.42
0.8
62.6
33
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
48.8
-0
1.8
65.69
45.1

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027147
6061088 - 6092694
31607
ENSAPLT00000008084
6062499 - 6092694
30196
ENSAPLT00000043899
6061088 - 6117297
56210