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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_609779_612045_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
609779 - 612045
Intron Length:
2267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGGA
5'SS Class:
major
3'SS Sequence:
TTCTGTTATCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTCTGTTATCC
Flanking Amino Acid:
SSLMEENSLLRRSCFPETEE
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.1
39.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
80.6
0.69
0.9
73.3
41.2
Minor 5ss
30.4
-2.2
3.3
34.8
43.6
Minor BPS
47.1
-0.2
2.3
62.84
43

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982