About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6130440_6131692_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6130440 - 6131692
Intron Length:
1253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
TTTTTGCTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTATTT
Flanking Amino Acid:
EISSNKDSKQVYMSAAEIPD
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67.9
39.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80
0.68
1
76.5
37.7
Minor 5ss
38.9
-1.2
3.1
47.7
42.3
Minor BPS
62
0.46
1.6
74.68
43.1

Associated Gene:

Gene:
INPP5K
Ensembl Gene ID:
ENSAPLG00000008625
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008996
6129992 - 6142751
12760