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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6131777_6132304_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6131777 - 6132304
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATTC
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCCTCCAGAAAG
Flanking Amino Acid:
SAWDWIGLFKVAFRHVNDYV
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
75.9
34.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
88.3
0.86
0.6
84.7
22.9
Minor 5ss
48
-0.2
2.9
68.1
42.9
Minor BPS
47.5
-0.3
1.9
54.58
45.8

Associated Gene:

Gene:
INPP5K
Ensembl Gene ID:
ENSAPLG00000008625
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008996
6129992 - 6142751
12760