About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6132443_6132692_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6132443 - 6132692
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGTCC
5'SS Class:
major
3'SS Sequence:
GTTCTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTGACTTTAAAT
Flanking Amino Acid:
KPVTGTFGLELKPLLTDPLI
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
65.4
34.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.2
0.7
0.8
73.6
37
Minor 5ss
32.6
-2
3.2
42.3
44.6
Minor BPS
62.8
0.48
1.5
73.64
43.3

Associated Gene:

Gene:
INPP5K
Ensembl Gene ID:
ENSAPLG00000008625
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008996
6129992 - 6142751
12760