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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6135317_6135882_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6135317 - 6135882
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTAAATGTAACT
Flanking Amino Acid:
RYNLLWEKDQLNMAKKKEAF
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.5
0.89
0.7
85.1
29.5
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
49.3
0.03
2.2
74.56
41.9

Associated Gene:

Gene:
INPP5K
Ensembl Gene ID:
ENSAPLG00000008625
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008996
6129992 - 6142751
12760