Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6152796_6153726_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6152796 - 6153726

Intron Length:

931

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TGTATCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAC

U12 Branch Point Sequence:

ATCTTTGTATCT

Flanking Amino Acid:

GRGPLGPNWKKELGKQTECP

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

89.6

24.2

Major BPS

77.7

0.69

0.9

69.1

37.9

Major PPT

83.2

0.75

0.9

77.2

36.9

Minor 5ss

57.8

0.27

2.3

75.5

40.6

Minor BPS

47.2

-0.1

2.2

68.89

42.9

Associated Gene:

Gene:

PITPNA

Ensembl Gene ID:

ENSAPLG00000008884

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030091

6150233 - 6161558

11326

ENSAPLT00000009273

6150233 - 6162460

12228