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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6180753_6180794_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6180753 - 6180794
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCTTTGAA
5'SS Class:
weak_major
3'SS Sequence:
CCCAGCCTGAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AGGCCTGGAATT
Flanking Amino Acid:
DPTGLLGPTPTTCMCCKLPA
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.8
0.07
1.3
56.8
36.2
Major BPS
74.8
0.62
1
67
39.8
Major PPT
49.1
-0
1.1
47.1
34.4
Minor 5ss
35.3
-1.7
3
40.3
40.1
Minor BPS
43.5
-0.4
2
57.25
39.7

Associated Gene:

Gene:
SLC43A2
Ensembl Gene ID:
ENSAPLG00000009653
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010086
6180703 - 6185939
5237