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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6182657_6184389_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6182657 - 6184389
Intron Length:
1733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTTTTGTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTGTTGACA
Flanking Amino Acid:
HSAVGGLYAAVYPSTQFGSL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
69.1
41.9
Major BPS
80
0.75
1
78.6
31
Major PPT
82.7
0.73
1
79.9
37.7
Minor 5ss
40.8
-1
3
54.6
42.6
Minor BPS
65.3
0.48
2.1
81.71
33.5

Associated Gene:

Gene:
SLC43A2
Ensembl Gene ID:
ENSAPLG00000009653
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010086
6180703 - 6185939
5237