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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6185451_6185874_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6185451 - 6185874
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGCGTAGT
5'SS Class:
major
3'SS Sequence:
GCTATTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CTTTTTGTAACA
Flanking Amino Acid:
SEENEESNAEQGEKKKKKRD
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.1
63
43
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
74.6
0.55
1
65
45.5
Minor 5ss
33.1
-1.9
3.1
47.2
42.5
Minor BPS
59.5
0.3
2
73.92
38.7

Associated Gene:

Gene:
SLC43A2
Ensembl Gene ID:
ENSAPLG00000009653
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010086
6180703 - 6185939
5237