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Intron Name: Anas_platyrhynchos_platyrhynchos_20_61873_62574_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

61873 - 62574

Intron Length:

702

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

AACACCTGAGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCTGCAA

U12 Branch Point Sequence:

GGTGCTGCAACA

Flanking Amino Acid:

AVKYQSKARRKKIMIIICCV

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

38.4

Major BPS

44.3

-0.3

1.5

51.3

44.2

Major PPT

53.8

0.09

1.1

47.8

39.3

Minor 5ss

-2.3

2.9

32.9

41.9

Minor BPS

44.4

-0.4

2.2

56.82

42.5

Associated Gene:

Gene:

STX1A

Ensembl Gene ID:

ENSAPLG00000006044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006280

60795 - 139656

78862