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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6218922_6219611_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6218922 - 6219611
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTGCAA
U12 Branch Point Sequence:
TCAGCTGCAACT
Flanking Amino Acid:
AQGSWNYNFMGVRHDPNMKY
Intron Amino Acid Position:
2191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
56.7
42.7
Major BPS
44.3
-0.3
1.5
51.3
44.2
Major PPT
84.6
0.78
0.7
76.4
32.2
Minor 5ss
33.3
-1.9
3
35.1
41
Minor BPS
45.3
-0.2
2.2
64.32
46.3

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730
Gene:
Ensembl Gene ID:
ENSAPLG00000020079
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025837
6217121 - 6219814
2694