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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6219815_6220006_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6219815 - 6220006
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGGC
5'SS Class:
major
3'SS Sequence:
GCTCTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TTAATCTGACTT
Flanking Amino Acid:
DGEKTIIITCSFTPGSCTLT
Intron Amino Acid Position:
2123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
60.3
39.3
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
80.7
0.69
0.8
77
31.7
Minor 5ss
23.9
-3
3.3
32.2
42.7
Minor BPS
49.6
0.05
1.7
70.05
41

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730