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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6220147_6220488_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6220147 - 6220488
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTTTTATCA
Flanking Amino Acid:
GQLPQHEYLKEMEPLGWIHT
Intron Amino Acid Position:
2077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.8
0.85
0.8
89
26.2
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
65.1
0.47
1.6
74.08
38.4

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730