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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6221448_6221797_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6221448 - 6221797
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCCAC
5'SS Class:
major
3'SS Sequence:
TTTTATCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGAATTTTATCT
Flanking Amino Acid:
LILADYGKKNNVNVASLTQS
Intron Amino Acid Position:
1902

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
66
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.2
0.93
0.7
89.2
27.3
Minor 5ss
39.9
-1.1
3.1
51.2
39.7
Minor BPS
54.1
0.21
1.6
69.85
41

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730