About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6221992_6222201_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6221992 - 6222201
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CATTTTCTAACT
Flanking Amino Acid:
DWLKTISSYTAFSRLILILR
Intron Amino Acid Position:
1838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
68.7
37.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77.7
0.62
0.9
83.1
25.7
Minor 5ss
27.6
-2.6
3
32.8
41.8
Minor BPS
61.2
0.43
1.7
77.11
39.5

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730