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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6222633_6223223_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6222633 - 6223223
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCT
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTCTTCTAACC
Flanking Amino Acid:
VWAGQKRLGQLAKWKTAEEV
Intron Amino Acid Position:
1742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.1
43
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
84.5
0.78
0.7
80.1
32
Minor 5ss
26.6
-2.7
3.4
38.8
46.5
Minor BPS
58.1
0.23
1.6
70.61
34.1

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730