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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6224639_6225263_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6224639 - 6225263
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTTAT
U12 Branch Point Sequence:
GATGAGTTATTC
Flanking Amino Acid:
VSRPSLLADSKDVMDSTTTQ
Intron Amino Acid Position:
1555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
55.8
0.14
1.4
49.4
46
Major PPT
75.3
0.57
0.8
73.7
31.4
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
40
-0.7
2.3
48.96
41.3

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730