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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6225795_6225973_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6225795 - 6225973
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTCTCACAGCT
Flanking Amino Acid:
WWSPTINRANVYVGFQVQLD
Intron Amino Acid Position:
1453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
85.3
32.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
41.7
-0.9
2.8
54.1
36.1
Minor BPS
45.3
-0.2
2
67.74
42.4

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730