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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6226577_6226817_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6226577 - 6226817
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGACA
5'SS Class:
major
3'SS Sequence:
CTGTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
CTGTTTTTCACA
Flanking Amino Acid:
RVRTDFKQYQVLKQNPFWWT
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.9
38
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
83.7
0.76
0.8
79.2
32.9
Minor 5ss
38.7
-1.3
3
49.8
46.1
Minor BPS
55.7
0.17
1.8
65.7
41.8

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730