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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6228069_6228154_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6228069 - 6228154
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAGAA
U12 Branch Point Sequence:
AGGCTGAGAACC
Flanking Amino Acid:
MASGSTTFTKIVNKWNTALI
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
47
-0.1
1.2
42.1
39.2
Major PPT
83.6
0.76
0.7
77.5
31.2
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
37.8
-0.9
2.1
44.72
36.5

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730