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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6228272_6228586_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6228272 - 6228586
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGTGA
5'SS Class:
major
3'SS Sequence:
TGTGCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GCTCCCAGGAAG
Flanking Amino Acid:
KDGVWNLQNEVTKERTAQCF
Intron Amino Acid Position:
1126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
66.6
41.6
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
80
0.68
0.9
73.4
37
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
41.6
-0.8
1.8
44.23
40.8

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730