Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6229200_6229730_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6229200 - 6229730

Intron Length:

531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

GGCGTGTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATAAC

U12 Branch Point Sequence:

GGTCACATAACT

Flanking Amino Acid:

RYIDRIHIFFRFTADEARDL

Intron Amino Acid Position:

1006

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.8

77.7

30.1

Major BPS

56.5

0.16

1.1

34.4

Major PPT

68.1

0.41

57.1

47.5

Minor 5ss

27.6

-2.6

3.3

39.2

46.2

Minor BPS

0.2

1.8

41.5

Associated Gene:

Gene:

PRPF8

Ensembl Gene ID:

ENSAPLG00000010357

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010838

6218603 - 6237332

18730