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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6231142_6231484_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6231142 - 6231484
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTTTCTCACTT
Flanking Amino Acid:
LALERLKEAYSVKSRLNQSQ
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
85.2
32.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.4
0.77
0.7
81.6
29.1
Minor 5ss
42.3
-0.9
3.5
64.1
47.4
Minor BPS
55.7
0.26
1.8
75.15
42.4

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730