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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6232254_6232641_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6232254 - 6232641
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCACA
5'SS Class:
major
3'SS Sequence:
TTGTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCGAT
U12 Branch Point Sequence:
GATGTCTGAACT
Flanking Amino Acid:
LGNLLARQFEGRHSKGVAKT
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
71.6
40.2
Major BPS
68.7
0.46
1.3
66.4
42.2
Major PPT
86.3
0.82
0.8
81.7
30.4
Minor 5ss
35.1
-1.7
2.7
41.7
44.5
Minor BPS
60.9
0.42
1.6
74.67
41.7

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730