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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6232772_6232882_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6232772 - 6232882
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAC
U12 Branch Point Sequence:
CCTCCTGTTACC
Flanking Amino Acid:
KHLIYYRFNTGPVGKGPGCG
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
58.2
0.2
1
49.5
35.1
Major PPT
88.1
0.86
0.7
80.5
31.5
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
44.5
-0.4
2.2
55.33
43.4

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730