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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6233460_6233773_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6233460 - 6233773
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGGCC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
AAATCCTGAATC
Flanking Amino Acid:
LKPVKTLTTKERKKSRFGNA
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
59.8
41.3
Major BPS
69.6
0.49
1
59.5
39
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
42.1
-0.9
3.4
59.5
45.4
Minor BPS
65.6
0.47
1.4
68.4
36.4

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730