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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6235325_6235402_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6235325 - 6235402
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GCTCTAATAATT
Flanking Amino Acid:
NNLPHHVHLTWYHTPNVVFI
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
80
0.75
1
78.6
31
Major PPT
81.7
0.71
0.9
76.2
37.8
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
46.8
-0.1
1.8
64.06
40.1

Associated Gene:

Gene:
PRPF8
Ensembl Gene ID:
ENSAPLG00000010357
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010838
6218603 - 6237332
18730