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Intron Name: Anas_platyrhynchos_platyrhynchos_20_6240399_6241784_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6240399 - 6241784

Intron Length:

1386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTCCG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCCTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTCAG

U12 Branch Point Sequence:

CCGGGCTCAGCC

Flanking Amino Acid:

SWELLFHHSVVIVCFGIAVL

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

0.9

64.1

41.7

Major BPS

45.3

-0.3

1.7

51.1

46.3

Major PPT

84.7

0.78

0.7

77.3

31.4

Minor 5ss

29.2

-2.4

2.7

30.6

36.2

Minor BPS

38.8

-0.8

2.1

41.56

45.3

Associated Gene:

Gene:

TLCD2

Ensembl Gene ID:

ENSAPLG00000029842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018353

6239138 - 6248107

8970