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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6244363_6247947_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6244363 - 6247947
Intron Length:
3585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAACC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGATTTAATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
68.6
36.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76
0.59
0.8
74.9
28.8
Minor 5ss
27.9
-2.5
3
34.8
41.3
Minor BPS
44.5
-0.3
1.9
59.06
45

Associated Gene:

Gene:
TLCD2
Ensembl Gene ID:
ENSAPLG00000029842
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018353
6239138 - 6248107
8970