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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_624954_626230_F

Intron Information:

Intron Rank:
146041
Intron Class:
major
Intron Phase:
Intron Coordinates:
624954 - 626230
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGGGTGAG
5'SS Class:
major
3'SS Sequence:
CTTATCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTTTGCTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
59.7
41.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
71.5
0.48
0.9
63.7
38
Minor 5ss
25.7
-2.8
3.2
30.8
43.2
Minor BPS
59.7
0.28
2.1
73.85
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028698
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020959
624533 - 628919
4387