Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6253273_6253843_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6253273 - 6253843

Intron Length:

571

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAAAGGC

5'SS Class:

major

3'SS Sequence:

CCTTCACTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

ATGCCCTTCACT

Flanking Amino Acid:

NVVVVGASFIGMEAAAFLSD

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

66.6

37.7

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

0.68

0.8

73.4

30.3

Minor 5ss

30.1

-2.3

3.4

41.8

Minor BPS

65.2

0.56

1.8

79.95

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011065

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011520

6250180 - 6257663

7484