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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6253960_6254380_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6253960 - 6254380
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGGAGA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
AATACTCAAACT
Flanking Amino Acid:
GPQVGGVCMKMLQNNGVKFY
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
70.8
40.9
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
28
-2.5
2.8
32.1
41.9
Minor BPS
48.1
-0
2
69.18
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011065
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011520
6250180 - 6257663
7484