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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6254453_6254790_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6254453 - 6254790
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCCAT
5'SS Class:
major
3'SS Sequence:
GCTCCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTGTTAATG
Flanking Amino Acid:
LCELKGKDGKVTEAIIASGK
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.3
68.8
43.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74.3
0.55
0.8
72.6
32.1
Minor 5ss
35
-1.7
3.1
47.7
47.8
Minor BPS
57.8
0.11
2.1
66.07
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011065
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011520
6250180 - 6257663
7484