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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6255386_6255470_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6255386 - 6255470
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
ATTGCACTAATT
Flanking Amino Acid:
DSSGAILVDLCMQTNIPNVF
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
75.4
0.57
0.9
75.5
34.3
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
52
0.14
2
76.43
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011065
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011520
6250180 - 6257663
7484