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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6256804_6257313_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6256804 - 6257313
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
TTGTGCTGAGAT
Flanking Amino Acid:
EQQKFLIFYIRDGFVTAAAS
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
87.4
0.84
0.6
85.2
22.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
46.8
-0.1
2.2
70.26
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011065
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011520
6250180 - 6257663
7484