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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6257419_6257526_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6257419 - 6257526
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
CTCTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGCAC
U12 Branch Point Sequence:
CTCTCCTTTACA
Flanking Amino Acid:
SGKRISKEEAEACDINQIPL
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
65
40.7
Major BPS
49.4
-0
1.3
61.1
36.4
Major PPT
85.1
0.79
0.7
79.2
26.4
Minor 5ss
34.3
-1.8
3.2
40.1
40
Minor BPS
69.8
0.62
1.7
75.21
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011065
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011520
6250180 - 6257663
7484