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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_626407_627462_F

Intron Information:

Intron Rank:
146042
Intron Class:
major
Intron Phase:
Intron Coordinates:
626407 - 627462
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
TGGGCATTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
81
0.7
0.7
76.6
25.5
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
53.5
0.09
1.8
63.66
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028698
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020959
624533 - 628919
4387