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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_62686_65240_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62686 - 65240
Intron Length:
2555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTACTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
CTGTCCCTACTC
Flanking Amino Acid:
MDMAMLVESQGEMIDRIEYN
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
75.5
0.57
0.8
68.7
31.3
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
49.4
-0
2
62.41
43.6

Associated Gene:

Gene:
STX1A
Ensembl Gene ID:
ENSAPLG00000006044
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006280
60795 - 139656
78862