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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6284700_6285631_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6284700 - 6285631
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
ACTGCTCTACCC
Flanking Amino Acid:
LSLDEVVKLKDLKGDGEVAS
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
50
0
1.2
61.8
35.9
Major PPT
77.7
0.62
0.8
69.4
36.9
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
45.8
-0.3
2
56.62
42.4

Associated Gene:

Gene:
SERPINF2
Ensembl Gene ID:
ENSAPLG00000011351
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041842
6282711 - 6290475
7765
ENSAPLT00000018391
6283295 - 6290475
7181