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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6286023_6286314_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6286023 - 6286314
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATTCC
5'SS Class:
major
3'SS Sequence:
GCCTTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGGGCATGAATT
Flanking Amino Acid:
IALALSHLALGAANQTEKHL
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.1
36.7
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
71.6
0.49
0.9
69.2
37
Minor 5ss
40.4
-1.1
2.8
45.2
42.9
Minor BPS
49
0
1.8
66.84
43.8

Associated Gene:

Gene:
SERPINF2
Ensembl Gene ID:
ENSAPLG00000011351
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041842
6282711 - 6290475
7765
ENSAPLT00000018391
6283295 - 6290475
7181
ENSAPLT00000011813
6285188 - 6290475
5288