About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6288613_6289432_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6288613 - 6289432
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CATTTCTCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GCTAATTTAAGT
Flanking Amino Acid:
LELSNILSQMGLQELFTNPN
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
74.6
0.55
0.8
70
30.5
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
49.4
0.03
1.9
66.13
44.4

Associated Gene:

Gene:
SERPINF2
Ensembl Gene ID:
ENSAPLG00000011351
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041842
6282711 - 6290475
7765
ENSAPLT00000018391
6283295 - 6290475
7181
ENSAPLT00000011813
6285188 - 6290475
5288