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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6314084_6314974_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6314084 - 6314974
Intron Length:
891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCACAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTGCACAATT
Flanking Amino Acid:
PIASLNPYQSKWTICARVTQ
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.3
0.41
1
63.1
41.9
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
48.7
-0
2.2
74.63
42.1

Associated Gene:

Gene:
RPA1
Ensembl Gene ID:
ENSAPLG00000012442
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034903
6311610 - 6354046
42437
ENSAPLT00000013010
6311610 - 6328311
16702