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Intron Name: Anas_platyrhynchos_platyrhynchos_20_6315078_6316215_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6315078 - 6316215

Intron Length:

1138

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

TGTTTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TTCTTACCAACT

Flanking Amino Acid:

LFSIELVDESGEIRATAFND

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

78.2

36.4

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

88.6

0.87

0.7

81.3

36.4

Minor 5ss

40.6

-1

3.4

45.5

Minor BPS

47.9

-0

2.1

73.92

42.6

Associated Gene:

Gene:

RPA1

Ensembl Gene ID:

ENSAPLG00000012442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013010

6311610 - 6328311

16702

ENSAPLT00000034903

6311610 - 6354046

42437