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Intron Name: Anas_platyrhynchos_platyrhynchos_20_6316285_6316428_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6316285 - 6316428

Intron Length:

144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGTAG

5'SS Class:

major

3'SS Sequence:

CTTTCTCCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

CTTCCAATAACA

Flanking Amino Acid:

KFFPLIELNKVYYFTKGNLK

Intron Amino Acid Position:

139

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

1.1

60.1

41.3

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

81.5

0.71

0.7

74.1

Minor 5ss

34.4

-1.8

3.5

49.3

Minor BPS

54.8

0.15

1.9

71.45

Associated Gene:

Gene:

RPA1

Ensembl Gene ID:

ENSAPLG00000012442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034903

6311610 - 6354046

42437

ENSAPLT00000013010

6311610 - 6328311

16702