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Intron Name: Anas_platyrhynchos_platyrhynchos_20_6316622_6317765_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6316622 - 6317765

Intron Length:

1144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTCAGTCTA

5'SS Class:

major

3'SS Sequence:

AACTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAA

U12 Branch Point Sequence:

GCATCTCTAACT

Flanking Amino Acid:

LENTPKDSIVDVIGICKSYE

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.3

69.3

43.2

Major BPS

68.7

0.47

0.9

67.9

Major PPT

80.3

0.68

0.8

77.2

36.1

Minor 5ss

33.7

-1.9

2.9

43.7

Minor BPS

61.1

0.43

1.7

74.33

42.2

Associated Gene:

Gene:

RPA1

Ensembl Gene ID:

ENSAPLG00000012442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034903

6311610 - 6354046

42437

ENSAPLT00000013010

6311610 - 6328311

16702