Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6317906_6319528_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6317906 - 6319528

Intron Length:

1623

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTGCACATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

TTTTTCTGCACA

Flanking Amino Acid:

LVTATLWGNEADTFDGSRQP

Intron Amino Acid Position:

250

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.8

80.6

31.9

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

0.45

63.1

37.6

Minor 5ss

41.4

-1

3.1

45.7

Minor BPS

62.4

0.38

1.9

79.77

36.3

Associated Gene:

Gene:

RPA1

Ensembl Gene ID:

ENSAPLG00000012442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034903

6311610 - 6354046

42437

ENSAPLT00000013010

6311610 - 6328311

16702