Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6321015_6322043_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6321015 - 6322043

Intron Length:

1029

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGCAT

5'SS Class:

major

3'SS Sequence:

CTCACTCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

TGTTGCACACTC

Flanking Amino Acid:

KAENLGQGDKADYFSCVGTV

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

62.9

43.2

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

69.5

0.44

0.8

61.4

34.9

Minor 5ss

30.4

-2.2

3.7

46.2

49.1

Minor BPS

40.9

-0.7

2.3

56.19

42.4

Associated Gene:

Gene:

RPA1

Ensembl Gene ID:

ENSAPLG00000012442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034903

6311610 - 6354046

42437

ENSAPLT00000013010

6311610 - 6328311

16702