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Intron Name: Anas_platyrhynchos_platyrhynchos_20_6322221_6323493_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6322221 - 6323493

Intron Length:

1273

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTACG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTGATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

GTTTGCTTAATT

Flanking Amino Acid:

PNFKYRMMLLVTIADCLEYQ

Intron Amino Acid Position:

402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

77.1

37.8

Major BPS

83.8

0.84

73.6

41.8

Major PPT

78.2

0.63

0.9

77.9

35.6

Minor 5ss

36.2

-1.6

2.6

40.8

39.1

Minor BPS

74.2

0.84

1.7

88.65

36.5

Associated Gene:

Gene:

RPA1

Ensembl Gene ID:

ENSAPLG00000012442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034903

6311610 - 6354046

42437

ENSAPLT00000013010

6311610 - 6328311

16702